Home > Cannot Execute > Mpirun Cannot Execute Binary File

Mpirun Cannot Execute Binary File


What is a satisfactory result of penetration testing assessment? Are there still systems around with a /bin/sh binary? Since I had been running into problems relating to a console application running from ssh, and learned about 'export TERM=console' and "ssh -t -t" along the way, I was convinced my I am running 64-bit CentOS. > > > > Any ideas of this error? > > > > Thanks, > > YW > > > > _______________________________________________ > > discuss mailing http://usableflash.com/cannot-execute/oui-cannot-execute-binary-file.php

Otherwise, this message means that ./executable is not in a format that the kernel recognizes. You signed in with another tab or window. Add set -x at the top of yet-another-bash-script (just below the #!/bin/bash line). asked 6 years ago viewed 64506 times active 3 years ago Linked -1 Remote app - bash: cannot execute binary file 4 “Permission denied” when starting binary despite “rwx” priviledge Related https://lists.sdsc.edu/pipermail/npaci-rocks-discussion/2006-October/021649.html

Cannot Execute Binary File In Linux

Make sure the script starts with: #!/bin/bash This only showed up for me when I ran the script with sudo -u share|improve this answer edited Nov 2 '13 at 4:32 I am guessing that you are running the MPI command on the host and hence you need to source the host MPI variables.  [[email protected]] source /opt/intel/impi/ [[email protected]] which mpirun /opt/intel/impi/ Also, Is adding the ‘tbl’ prefix to table names really a problem? In a "make -C" line of one script, I had left off a target name, so the default target was built instead of the one I intended.

thank you > all for your help. > > Kailee > > ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber_at_scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu Next In fact, it's bash's way of expressing ENOEXEC (more commonly expressed as exec format error. UNIX is a registered trademark of The Open Group. Cannot Execute Binary File Java However, when Hudson tries to do the same thing, over in the minicom session it complains about a line in the "yet another bash script" that invokes the C executable, ./executable,

When I invoke "./kickOffTests.sh", there are several layers of scripts down before "./executable" is invoked on the target. I've written a runscript (http://linux.die.net/man/1/runscript) script to do everything needed on the actual target; it boots the image, mounts a directory from Server B and executes the tests. im running mpirun on Rocks 4.2 and getting some problem. Case: "Re: AMBER: sander: cannot execute binary file" Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] Hi, all, Thanks for your reply, as Ross

Often one > sees these sort 'cannot execute' errors when the executable file was > compiled on a different architecture than the one that you are trying to run > on. Cannot Execute Binary File Exec Format Error Cygwin You can find the test code in /test. 3) Can you please share the results of the following commands:      $ which mpirun     $env | grep I_MPI 4) Case: "Re: AMBER: sander: cannot execute binary file" Reply: David A. Wed, 05/21/2014 - 01:15 Hi Sumedh, Pardon me for the delayed response.I was successful in launching the symmetric mode from Host machine.

Cannot Execute Binary File Exec Format Error Ubuntu

Skyrim: How to stop NPCs from picking up dropped items Do Morpheus and his crew kill potential Ones? http://unix.stackexchange.com/questions/3580/executable-cannot-execute-binary-file How do I deal with my current employer not respecting my decision to leave? Cannot Execute Binary File In Linux mrryanjohnston commented Sep 29, 2015 There's a quick fix for this posted here: docker/docker#16479 (comment) OscarF commented Oct 6, 2015 This is fixed by #211 mchiang0610 closed this Oct 21, 2015 Bash Cannot Execute Binary File Mac The prefix is in particular useful if your MIC executable has an identical name but is located in another directory, e.g.: Executable on coprocessor: local_sub_dir/executable_Xeonexport I_MPI_MIC_PREFIX=local_sub_dir/ Top Log in to post comments ravi O.

how to solve this? weblink export PATH=$AMBERHOME/exe:$PATH ________________________________ From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of Kailee Sent: Thursday, December 14, 2006 9:54 AM To: amber Subject: AMBER: sander: cannot execute binary file Hi how to solve this? Build me a brick wall! Bash Cannot Execute Binary File Exec Format Error

Safety - Improve braking power in wet conditions What is the point of update independent rendering in a game loop? Cheers, KÃre -- Problem reports: http://cygwin.com/problems.html FAQ: http://cygwin.com/faq/ Documentation: http://cygwin.com/docs.html Unsubscribe info: http://cygwin.com/ml/#unsubscribe-simple Follow-Ups: Re: cannot execute binary file From: Eliot Moss References: Re: cannot execute binary file From: Edvardsen KÃre Join them; it only takes a minute: Sign up Here's how it works: Anybody can ask a question Anybody can answer The best answers are voted up and rise to the http://usableflash.com/cannot-execute/p4v-cannot-execute-binary-file.php Terms Privacy Security Status Help You can't perform that action at this time.

A bash script on Server B invokes minicom with the runscript script along with some companion actions. Cannot Execute Binary File Ubuntu The -machinefile option is a global flag so you cannot use it for each argument set as you're doing. Index Nav: [DateIndex] [SubjectIndex] [AuthorIndex] [ThreadIndex] Message Nav: [DatePrev][DateNext] [ThreadPrev][ThreadNext] Other format: [Raw text] Re: cannot execute binary file From: Marco Atzeri To: cygwin


Modifying the bashrc was necessary because I have to take care of application specific exports.the content of my machine file is as follows: Host-hostname:24 MiC-hostname:60 Yes you are correct I can Already have an account? Server C (RH) hosts Hudson, with Server B as a slave. Java Cannot Execute Binary File: Exec Format Error I am automating tests on an embedded linux system (the target).

I'll try to reinstall cygwin as admin to see if things change. Log in to post comments Sumedh N. (Intel) Thu, 03/06/2014 - 10:12 Hi Ravi,  Your command line is incorrect. I am on Server C, I can get those tests run by ssh'ing to Server B and executing the script that ssh's to Server A which executes minicom with runscript. his comment is here I tried using the line export TERM=console in the configuration just before running kickOffTests.sh, but the problem remains.

This site is not affiliated with Linus Torvalds or The Open Group in any way. Thu, 03/06/2014 - 02:48 Hi, I am trying to run a hybrid mode(Xeon and MiC) of my application using MPI. Join today Support Terms of Use *Trademarks Privacy Cookies Publications Intel® Developer Zone Newsletter Intel® Parallel Universe Magazine Look for us on: FacebookTwitterGoogle+LinkedInYouTube English简体中文EspañolPortuguês Rate Us RE: AMBER: sander: cannot execute share|improve this answer edited Oct 28 '10 at 20:20 answered Oct 28 '10 at 19:03 Gilles 377k716901135 If the script contains ". ./executable" then wouldn't I encounter this problem

However, when I tried to run some of my own jobs, I had such error message: ************************************************************************ ************* /home/usr/kailee/mpich-1.2.7p1/bin/mpirun: line 1: /home/usr/kailee/amber8/exe/sander: cannot execute binary file ************************************************************************ ************* And ldd -r mpiexec.hydra > > -- > Huiwei > > On May 21, 2014, at 8:53 PM, Yida Wang wrote: > > > The same error: > > I am spawining the executables from MiC using I_MPI_MIC=1 and sourcing all the paths/exports in the bash of mic before launching the executables. Top Log in to post comments Taylor IoT Kidd Wed, 05/21/2014 - 07:54 Ravi, Thanks for documenting this for the community.

It could be that the target is booted differently and some loadable module that provides the support for the format of ./executable doesn't get loaded (or is not loaded yet) in You might want to use set -x in other scripts to help you there, and inspect the boot logs from the target. Have you encountered similar problem before? Here's a list of additional data that may help: Output of file …/executable on server B.

Is that correct?  Top Log in to post comments ravi O. Just to confirm, are you running mpiexec.hydra under root too? -- Huiwei On May 21, 2014, at 9:14 PM, Yida Wang wrote: > 1. -rwxr-xr-x 1 root root All compiling (configure, make etc) goes like nothing's wrong (just a few harmless warnings known for ages for this software). Here is my mpirun command mpirun -genv I_MPI_FABRICS shm:tcp -n 24 -machinefile machinefile parameters: -genvnone -n 60 -machinefile machinefile sh script.sh I exported all the paths for Xeon along with